How trees allocate carbon for optimal growth: insight from a game-theoretic model.
Identifieur interne : 000E45 ( Main/Exploration ); précédent : 000E44; suivant : 000E46How trees allocate carbon for optimal growth: insight from a game-theoretic model.
Auteurs : Liyong Fu [République populaire de Chine] ; Lidan Sun [République populaire de Chine] ; Han Hao [États-Unis] ; Libo Jiang [République populaire de Chine] ; Sheng Zhu [République populaire de Chine] ; Meixia Ye [République populaire de Chine] ; Shouzheng Tang [République populaire de Chine] ; Minren Huang [République populaire de Chine] ; Rongling Wu [République populaire de Chine]Source :
- Briefings in bioinformatics [ 1477-4054 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- croissance et développement : Arbres.
- génétique : Arbres.
- métabolisme : Arbres, Carbone.
- Dynamique des populations, Locus de caractère quantitatif, Modèles biologiques, Saisons, Théorie du jeu.
English descriptors
- KwdEn :
- MESH :
- chemical , metabolism : Carbon.
- genetics : Trees.
- growth & development : Trees.
- metabolism : Trees.
- Game Theory, Models, Biological, Population Dynamics, Quantitative Trait Loci, Seasons.
Abstract
How trees allocate photosynthetic products to primary height growth and secondary radial growth reflects their capacity to best use environmental resources. Despite substantial efforts to explore tree height-diameter relationship empirically and through theoretical modeling, our understanding of the biological mechanisms that govern this phenomenon is still limited. By thinking of stem woody biomass production as an ecological system of apical and lateral growth components, we implement game theory to model and discern how these two components cooperate symbiotically with each other or compete for resources to determine the size of a tree stem. This resulting allometry game theory is further embedded within a genetic mapping and association paradigm, allowing the genetic loci mediating the carbon allocation of stemwood growth to be characterized and mapped throughout the genome. Allometry game theory was validated by analyzing a mapping data of stem height and diameter growth over perennial seasons in a poplar tree. Several key quantitative trait loci were found to interpret the process and pattern of stemwood growth through regulating the ecological interactions of stem apical and lateral growth. The application of allometry game theory enables the prediction of the situations in which the cooperation, competition or altruism is an optimal decision of a tree to fully use the environmental resources it owns.
DOI: 10.1093/bib/bbx003
PubMed: 28158473
Affiliations:
Links toward previous steps (curation, corpus...)
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Huang</name><affiliation wicri:level="1"><nlm:affiliation>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Rongling" sort="Wu, Rongling" uniqKey="Wu R" first="Rongling" last="Wu">Rongling Wu</name><affiliation wicri:level="3"><nlm:affiliation>Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, 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Computational Biology at Beijing Forestry University, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Computational Biology at Beijing Forestry University</wicri:regionArea></affiliation><affiliation wicri:level="3"><nlm:affiliation>Institute of Forest Resource Information Techniques at Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Forest Resource Information Techniques at Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sun, Lidan" sort="Sun, Lidan" uniqKey="Sun L" first="Lidan" last="Sun">Lidan Sun</name><affiliation wicri:level="3"><nlm:affiliation>Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, School of Landscape Architecture at Beijing Forestry University, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, School of Landscape Architecture at Beijing Forestry University, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Hao, Han" sort="Hao, Han" uniqKey="Hao H" first="Han" last="Hao">Han Hao</name><affiliation wicri:level="1"><nlm:affiliation>Department of Statistics at The Pennsylvania State University, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Statistics at The Pennsylvania State University</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics at the University of North Texas, Denton, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Mathematics at the University of North Texas, Denton</wicri:regionArea><wicri:noRegion>Denton</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Libo" sort="Jiang, Libo" uniqKey="Jiang L" first="Libo" last="Jiang">Libo Jiang</name><affiliation wicri:level="3"><nlm:affiliation>Center for Computational Biology at Beijing Forestry University, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Computational Biology at Beijing Forestry University, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhu, Sheng" sort="Zhu, Sheng" uniqKey="Zhu S" first="Sheng" last="Zhu">Sheng Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Ye, Meixia" sort="Ye, Meixia" uniqKey="Ye M" first="Meixia" last="Ye">Meixia Ye</name><affiliation wicri:level="3"><nlm:affiliation>Center for Computational Biology at Beijing Forestry University, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Computational Biology at Beijing Forestry University, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Shouzheng" sort="Tang, Shouzheng" uniqKey="Tang S" first="Shouzheng" last="Tang">Shouzheng Tang</name><affiliation wicri:level="3"><nlm:affiliation>Forest Management in the Institute of Forest Resource Information Techniques at Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Forest Management in the Institute of Forest Resource Information Techniques at Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Huang, Minren" sort="Huang, Minren" uniqKey="Huang M" first="Minren" last="Huang">Minren Huang</name><affiliation wicri:level="1"><nlm:affiliation>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Rongling" sort="Wu, Rongling" uniqKey="Wu R" first="Rongling" last="Wu">Rongling Wu</name><affiliation wicri:level="3"><nlm:affiliation>Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Briefings in bioinformatics</title><idno type="eISSN">1477-4054</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Carbon (metabolism)</term><term>Game Theory (MeSH)</term><term>Models, Biological (MeSH)</term><term>Population Dynamics (MeSH)</term><term>Quantitative Trait Loci (MeSH)</term><term>Seasons (MeSH)</term><term>Trees (genetics)</term><term>Trees (growth & development)</term><term>Trees (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arbres (croissance et développement)</term><term>Arbres (génétique)</term><term>Arbres (métabolisme)</term><term>Carbone (métabolisme)</term><term>Dynamique des populations (MeSH)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Modèles biologiques (MeSH)</term><term>Saisons (MeSH)</term><term>Théorie du jeu (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Carbon</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Arbres</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arbres</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Arbres</term><term>Carbone</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Game Theory</term><term>Models, Biological</term><term>Population Dynamics</term><term>Quantitative Trait Loci</term><term>Seasons</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Dynamique des populations</term><term>Locus de caractère quantitatif</term><term>Modèles biologiques</term><term>Saisons</term><term>Théorie du jeu</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">How trees allocate photosynthetic products to primary height growth and secondary radial growth reflects their capacity to best use environmental resources. Despite substantial efforts to explore tree height-diameter relationship empirically and through theoretical modeling, our understanding of the biological mechanisms that govern this phenomenon is still limited. By thinking of stem woody biomass production as an ecological system of apical and lateral growth components, we implement game theory to model and discern how these two components cooperate symbiotically with each other or compete for resources to determine the size of a tree stem. This resulting allometry game theory is further embedded within a genetic mapping and association paradigm, allowing the genetic loci mediating the carbon allocation of stemwood growth to be characterized and mapped throughout the genome. Allometry game theory was validated by analyzing a mapping data of stem height and diameter growth over perennial seasons in a poplar tree. Several key quantitative trait loci were found to interpret the process and pattern of stemwood growth through regulating the ecological interactions of stem apical and lateral growth. The application of allometry game theory enables the prediction of the situations in which the cooperation, competition or altruism is an optimal decision of a tree to fully use the environmental resources it owns.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28158473</PMID><DateCompleted><Year>2019</Year><Month>03</Month><Day>08</Day></DateCompleted><DateRevised><Year>2019</Year><Month>03</Month><Day>08</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1477-4054</ISSN><JournalIssue CitedMedium="Internet"><Volume>19</Volume><Issue>4</Issue><PubDate><Year>2018</Year><Month>07</Month><Day>20</Day></PubDate></JournalIssue><Title>Briefings in bioinformatics</Title><ISOAbbreviation>Brief Bioinform</ISOAbbreviation></Journal><ArticleTitle>How trees allocate carbon for optimal growth: insight from a game-theoretic model.</ArticleTitle><Pagination><MedlinePgn>593-602</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/bib/bbx003</ELocationID><Abstract><AbstractText>How trees allocate photosynthetic products to primary height growth and secondary radial growth reflects their capacity to best use environmental resources. Despite substantial efforts to explore tree height-diameter relationship empirically and through theoretical modeling, our understanding of the biological mechanisms that govern this phenomenon is still limited. By thinking of stem woody biomass production as an ecological system of apical and lateral growth components, we implement game theory to model and discern how these two components cooperate symbiotically with each other or compete for resources to determine the size of a tree stem. This resulting allometry game theory is further embedded within a genetic mapping and association paradigm, allowing the genetic loci mediating the carbon allocation of stemwood growth to be characterized and mapped throughout the genome. Allometry game theory was validated by analyzing a mapping data of stem height and diameter growth over perennial seasons in a poplar tree. Several key quantitative trait loci were found to interpret the process and pattern of stemwood growth through regulating the ecological interactions of stem apical and lateral growth. The application of allometry game theory enables the prediction of the situations in which the cooperation, competition or altruism is an optimal decision of a tree to fully use the environmental resources it owns.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fu</LastName><ForeName>Liyong</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Center for Computational Biology at Beijing Forestry University, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Forest Resource Information Techniques at Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Lidan</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, School of Landscape Architecture at Beijing Forestry University, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hao</LastName><ForeName>Han</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Statistics at The Pennsylvania State University, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Mathematics at the University of North Texas, Denton, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Libo</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Center for Computational Biology at Beijing Forestry University, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Sheng</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Meixia</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Center for Computational Biology at Beijing Forestry University, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Shouzheng</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Forest Management in the Institute of Forest Resource Information Techniques at Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Minren</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement at Nanjing Forestry University, Nanjing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Rongling</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Brief Bioinform</MedlineTA><NlmUniqueID>100912837</NlmUniqueID><ISSNLinking>1467-5463</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>7440-44-0</RegistryNumber><NameOfSubstance UI="D002244">Carbon</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>Brief Bioinform. 2019 Sep 27;20(5):1956</RefSource><PMID Version="1">30010710</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D002244" MajorTopicYN="N">Carbon</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005716" MajorTopicYN="Y">Game Theory</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008954" MajorTopicYN="Y">Models, Biological</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011157" MajorTopicYN="N">Population Dynamics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>10</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>2</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>3</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>2</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28158473</ArticleId><ArticleId IdType="pii">2965638</ArticleId><ArticleId IdType="doi">10.1093/bib/bbx003</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Fu, Liyong" sort="Fu, Liyong" uniqKey="Fu L" first="Liyong" last="Fu">Liyong Fu</name></noRegion><name sortKey="Fu, Liyong" sort="Fu, Liyong" uniqKey="Fu L" first="Liyong" last="Fu">Liyong Fu</name><name sortKey="Huang, Minren" sort="Huang, Minren" uniqKey="Huang M" first="Minren" last="Huang">Minren Huang</name><name sortKey="Jiang, Libo" sort="Jiang, Libo" uniqKey="Jiang L" first="Libo" last="Jiang">Libo Jiang</name><name sortKey="Sun, Lidan" sort="Sun, Lidan" uniqKey="Sun L" first="Lidan" last="Sun">Lidan Sun</name><name sortKey="Tang, Shouzheng" sort="Tang, Shouzheng" uniqKey="Tang S" first="Shouzheng" last="Tang">Shouzheng Tang</name><name sortKey="Wu, Rongling" sort="Wu, Rongling" uniqKey="Wu R" first="Rongling" last="Wu">Rongling Wu</name><name sortKey="Ye, Meixia" sort="Ye, Meixia" uniqKey="Ye M" first="Meixia" last="Ye">Meixia Ye</name><name sortKey="Zhu, Sheng" sort="Zhu, Sheng" uniqKey="Zhu S" first="Sheng" last="Zhu">Sheng Zhu</name></country><country name="États-Unis"><noRegion><name sortKey="Hao, Han" sort="Hao, Han" uniqKey="Hao H" first="Han" last="Hao">Han Hao</name></noRegion><name sortKey="Hao, Han" sort="Hao, Han" uniqKey="Hao H" first="Han" last="Hao">Han Hao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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